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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ImmuneSigR" in publications use:'
type: software
license: GPL-3.0-only
title: 'ImmuneSigR: Immune Cell Signature Retrieval and Single-Cell Scoring'
version: 0.1.0
doi: 10.32614/CRAN.package.ImmuneSigR
abstract: Provides a literature-derived database of immune cell markers formatted
  as Gene Matrix Transposed (GMT) files. Users can search immune cell signatures,
  retrieve marker lists, export GMT files, create custom marker sets, and score gene-by-cell
  expression matrices with dependency-free rank-based or mean-expression methods.
  Cell subpopulations are distinguished by their source PMIDs. For the core curation
  of the lung cell atlas, see Travaglini et al. (2020) <https://doi.org/10.1038/s41586-020-2922-4>.
  For the pan-cancer B cell signatures, see Fitzsimons et al. (2024) <https://doi.org/10.1016/j.ccell.2024.09.011>.
authors:
- family-names: Liang
  given-names: Yingyan
  email: liangyingyan0625@163.com
- family-names: Luo
  given-names: Peng
  email: luopeng@smu.edu.cn
repository: https://yingyanlaing.r-universe.dev
repository-code: https://github.com/YingYanLaing/ImmuneSigR
commit: d04c8ef239a4674cd560f8a7d5cbbdd427a07ab0
url: https://github.com/YingYanLaing/ImmuneSigR
date-released: '2026-05-20'
contact:
- family-names: Liang
  given-names: Yingyan
  email: liangyingyan0625@163.com